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1.
Nucleic Acids Res ; 52(8): e41, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38554110

RESUMEN

Human apurinic/apyrimidinic endonuclease 1 (APE1) plays crucial roles in repairing DNA damage and regulating RNA in the nucleus. However, direct visualization of nuclear APE1 in live cells remains challenging. Here, we report a chaperone@DNA probe for live-cell imaging of APE1 in the nucleus and nucleolus in real time. The probe is based on an assembly of phenylboronic acid modified avidin and biotin-labeled DNA containing an abasic site (named PB-ACP), which cleverly protects DNA from being nonspecifically destroyed while enabling targeted delivery of the probe to the nucleus. The PB-ACP construct specifically detects APE1 due to the high binding affinity of APE1 for both avidin and the abasic site in DNA. It is easy to prepare, biocompatible and allowing for long-term observation of APE1 activity. This molecular tool offers a powerful means to investigate the behavior of APE1 in the nuclei of various types of live cells, particularly for the development of improved cancer therapies targeting this protein.


Asunto(s)
Nucléolo Celular , Núcleo Celular , Sondas de ADN , ADN-(Sitio Apurínico o Apirimidínico) Liasa , ADN-(Sitio Apurínico o Apirimidínico) Liasa/metabolismo , Humanos , Nucléolo Celular/metabolismo , Núcleo Celular/metabolismo , Sondas de ADN/química , Células HeLa , Chaperonas Moleculares/metabolismo , Avidina/química , Avidina/metabolismo , ADN/metabolismo , Biotina/química
2.
J Nanobiotechnology ; 22(1): 87, 2024 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-38429776

RESUMEN

Bone defects remain a significant challenge in clinical orthopedics, but no targeted medication can solve these problems. Inspired by inflammatory targeting properties of macrophages, inflammatory microenvironment of bone defects was exploited to develop a multifunctional nanocarrier capable of targeting bone defects and promoting bone regeneration. The avidin-modified black phosphorus nanosheets (BP-Avidin, BPAvi) were combined with biotin-modified Icaritin (ICT-Biotin, ICTBio) to synthesize Icaritin (ICT)-loaded black phosphorus nanosheets (BPICT). BPICT was then coated with macrophage membranes (MMs) to obtain MMs-camouflaged BPICT (M@BPICT). Herein, MMs allowed BPICT to target bone defects area, and BPICT accelerated the release of phosphate ions (PO43-) and ICT when exposed to NIR irradiation. PO43- recruited calcium ions (Ca2+) from the microenvironment to produce Ca3(PO4)2, and ICT increased the expression of osteogenesis-related proteins. Additionally, M@BPICT can decrease M1 polarization of macrophage and expression of pro-inflammatory factors to promote osteogenesis. According to the results, M@BPICT provided bone growth factor and bone repair material, modulated inflammatory microenvironment, and activated osteogenesis-related signaling pathways to promote bone regeneration. PTT could significantly enhance these effects. This strategy not only offers a solution to the challenging problem of drug-targeted delivery in bone defects but also expands the biomedical applications of MMs-camouflaged nanocarriers.


Asunto(s)
Avidina , Osteogénesis , Avidina/metabolismo , Avidina/farmacología , Biotina , Fototerapia , Macrófagos/metabolismo , Regeneración Ósea , Fósforo/farmacología , Fosfatos
3.
Allergy ; 79(2): 445-455, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37916710

RESUMEN

BACKGROUND: Conventional basophil activation tests (BATs) measure basophil activation by the increased expression of CD63. Previously, fluorophore-labeled avidin, a positively-charged molecule, was found to bind to activated basophils, which tend to expose negatively charged granule constituents during degranulation. This study further compares avidin versus CD63 as basophil activation biomarkers in classifying peanut allergy. METHODS: Seventy subjects with either a peanut allergy (N = 47), a food allergy other than peanut (N = 6), or no food allergy (N = 17) were evaluated. We conducted BATs in response to seven peanut extract (PE) concentrations (0.01-10,000 ng/mL) and four control conditions (no stimulant, anti-IgE, fMLP (N-formylmethionine-leucyl-phenylalanine), and anti-FcεRI). We measured avidin binding and CD63 expression on basophils with flow cytometry. We evaluated logistic regression and XGBoost models for peanut allergy classification and feature identification. RESULTS: Avidin binding was correlated with CD63 expression. Both markers discriminated between subjects with and without a peanut allergy. Although small by percentage, an avidin+ /CD63- cell subset was found in all allergic subjects tested, indicating that the combination of avidin and CD63 could allow a more comprehensive identification of activated basophils. Indeed, we obtained the best classification accuracy (97.8% sensitivity, 96.7% specificity) by combining avidin and CD63 across seven PE doses. Similar accuracy was obtained by combining PE dose of 10,000 ng/mL for avidin and PE doses of 10 and 100 ng/mL for CD63. CONCLUSIONS: Avidin and CD63 are reliable BAT activation markers associated with degranulation. Their combination enhances the identification of activated basophils and improves the classification accuracy of peanut allergy.


Asunto(s)
Prueba de Desgranulación de los Basófilos , Hipersensibilidad al Cacahuete , Humanos , Hipersensibilidad al Cacahuete/diagnóstico , Hipersensibilidad al Cacahuete/metabolismo , Avidina/metabolismo , Inmunoglobulina E/metabolismo , Basófilos/metabolismo , Citometría de Flujo , Arachis , Tetraspanina 30/metabolismo
4.
Biomaterials ; 303: 122394, 2023 12.
Artículo en Inglés | MEDLINE | ID: mdl-38007919

RESUMEN

Nanodecoy systems based on analogues of viral cellular receptors assembled onto fluid lipid-based membranes of nano/extravescicles are potential new tools to complement classic therapeutic or preventive antiviral approaches. The need for lipid-based membranes for transmembrane receptor anchorage may pose technical challenges along industrial translation, calling for alternative geometries for receptor multimerization. Here we developed a semisynthetic self-assembling SARS-CoV-2 nanodecoy by multimerizing the biotin labelled virus cell receptor -ACE2- ectodomain onto a poly-avidin nanoparticle (NP) based on the Avidin-Nucleic-Acid-NanoASsembly-ANANAS. The ability of the assembly to prevent SARS-CoV-2 infection in human lung cells and the affinity of the ACE2:viral receptor-binding domain (RBD) interaction were measured at different ACE2:NP ratios. At ACE2:NP = 30, 90 % SARS-CoV-2 infection inhibition at ACE2 nanomolar concentration was registered on both Wuhan and Omicron variants, with ten-fold higher potency than the monomeric protein. Lower and higher ACE2 densities were less efficient suggesting that functional recognition between multi-ligand NPs and multi-receptor virus surfaces requires optimal geometrical relationships. In vivo studies in mice showed that the biodistribution and safety profiles of the nanodecoy are potentially suitable for preventing viral infection upon nasal instillation. Viral receptor multimerization using ANANAS is a convenient process which, in principle, could be rapidly adapted to counteract also other viral infections.


Asunto(s)
COVID-19 , Ácidos Nucleicos , Animales , Humanos , Ratones , SARS-CoV-2/metabolismo , Avidina/metabolismo , Enzima Convertidora de Angiotensina 2/química , Enzima Convertidora de Angiotensina 2/metabolismo , Ácidos Nucleicos/metabolismo , Distribución Tisular , Unión Proteica , Receptores Virales , Lípidos
5.
Proteins ; 91(10): 1437-1443, 2023 10.
Artículo en Inglés | MEDLINE | ID: mdl-37318226

RESUMEN

The interaction between avidin and its counterpart biotin is one of central importance in biology and has been reproposed and studied at length. However, the binding pocket of avidin is prone to promiscuous binding, able to accommodate even non-biotinylated ligands. Comprehending the factors that distinguish the extremely strong interaction with biotin to other ligands is an important step to fully picture the thermodynamics of these low-affinity complexes. Here, we present the complex between chicken white egg avidin and theophylline (TEP), the xanthine derivative used in the therapy of asthma. In the crystal structure, TEP lies in the biotin-binding pocket with the same orientation and planarity of the aromatic ring of 8-oxodeoxyguanosine. Indeed, its affinity for avidin measured by isothermal titration calorimetry is in the same µM range as those obtained for the previously characterized nucleoside derivatives. By the use of molecular dynamic simulations, we have investigated the most important intermolecular interactions occurring in the avidin-TEP binding pocket and compared them with those obtained for the avidin 8-oxodeoxyguanosine and avidin-biotin complexes. These results testify the capability of avidin to complex purely aromatic molecules.


Asunto(s)
Avidina , Biotina , Avidina/química , Avidina/metabolismo , Biotina/química , Biotina/metabolismo , Teofilina , Ligandos , Termodinámica
6.
Osteoarthritis Cartilage ; 31(6): 780-792, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-36739939

RESUMEN

OBJECTIVE: Blocking the interleukin-1 (IL-1) catabolic cascade following joint trauma can be achieved using its receptor antagonist, IL-1Ra. However, its clinical translation for osteoarthritis therapy has been unsuccessful due to its rapid joint clearance and lack of targeting and penetration into deep cartilage layers at therapeutic concentrations. Here, we target the high negative charge of cartilage aggrecan-glycosaminoglycans (GAGs) by attaching cationic carriers to IL-1Ra. IL-1Ra was conjugated to the cartilage targeting glycoprotein, Avidin, and a short length optimally charged cationic peptide carrier (CPC+14). It is hypothesized that electro-diffusive transport and binding properties of IL-1Ra-Avidin and IL-1Ra-CPC+14 will create intra-cartilage depots of IL-1Ra, resulting in long-term suppression of IL-1 catabolism with only a single administration. DESIGN: IL-1Ra was conjugated to Avidin or CPC+14 using site specific maleimide linkers, and confirmed using gel electrophoresis, high-performance liquid chromatography (HPLC), and mass spectrometry. Intra-cartilage transport and retention of conjugates was compared with native IL-1Ra. Attenuation of IL-1 catabolic signaling with one-time dose of IL-1Ra-CPC+14 and IL-1Ra-Avidin was assessed over 16 days using IL-1α challenged bovine cartilage and compared with unmodified IL-1Ra. RESULTS: Positively charged IL-1Ra penetrated through the full-thickness of cartilage, creating a drug depot. A single dose of unmodified IL-1Ra was not sufficient to attenuate IL-1-induced cartilage deterioration over 16 days. However, when delivered using Avidin, and to a greater extent CPC+14, IL-1Ra significantly suppressed cytokine induced GAG loss and nitrite release while improving cell metabolism and viability. CONCLUSION: Charge-based cartilage targeting drug delivery systems hold promise as they can enable long-term therapeutic benefit with only a single dose.


Asunto(s)
Avidina , Cartílago , Animales , Bovinos , Avidina/metabolismo , Avidina/farmacología , Cartílago/metabolismo , Péptidos/metabolismo , Proteína Antagonista del Receptor de Interleucina 1/metabolismo , Proteína Antagonista del Receptor de Interleucina 1/farmacología , Sistemas de Liberación de Medicamentos , Receptores de Interleucina-1/metabolismo
7.
Osteoarthritis Cartilage ; 31(2): 187-198, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36241136

RESUMEN

OBJECTIVES: Cartilage targeting cationic glycoprotein Avidin was PEGylated to synthesize a multi-arm Avidin (mAv) nano-construct with high drug loading content. Here we investigate mAv biodistribution and kinetics over a 7-day period following intra-articular (IA) administration in rat knee joints. METHODS: Labeled mAv was injected into healthy rat knees, and joint tissues (articular cartilage, menisci, ligaments, tendons, fat pad) were harvested following sacrifice at 6 h, 1, 4 and 7 days. Its IA biodistribution and retention were measured using fluorescence microscopy. Tissue localization was compared in young vs old rats by immunohistochemistry. mAv chondrotoxicity and immune response were evaluated to determine safe carrier dose limits. RESULTS: mAv penetrated through the full thickness of rat cartilage and other joint tissues within 6 h, remaining detectable within most joint tissues over 7 days. Intra-tissue uptake correlated strongly with tissue GAG concentration, confirming the dominant role of electrostatic interactions between positively charged mAv and the negatively charged aggrecan proteoglycans. mAv was uptaken by chondrocytes and also penetrated the osteocyte lacuno-canalicular system of peri-articular bone in both young and old rats. mAv did not cause cytotoxicity at concentrations up to 300 µM but elicited a dose dependent immunogenic response. CONCLUSIONS: mAv's ability to target a variety of joint tissues, chondrocytes, and peri-articular osteocytes without sequestration in synovial fluid makes it a versatile carrier for delivering a wide range of drugs for treating a broad class of musculoskeletal diseases. Drugs can be conjugated using simple aqueous based avidin-biotin reaction, supporting its clinical prospects.


Asunto(s)
Avidina , Cartílago Articular , Ratas , Animales , Avidina/metabolismo , Distribución Tisular , Sistemas de Liberación de Medicamentos , Cartílago Articular/metabolismo , Polietilenglicoles/metabolismo , Inyecciones Intraarticulares
8.
Biomacromolecules ; 23(9): 3688-3697, 2022 09 12.
Artículo en Inglés | MEDLINE | ID: mdl-35977087

RESUMEN

In this study, functional twin liposomes (TLs) were designed by linking avidin-anchored single liposomes and biotin-anchored single liposomes via avidin-biotin interactions. Here, we first punched a hole on the liposome surface using the liposome magnetoporation method to prepare functional single liposomes, which were used for safely encapsulating quercetin (QER, as a model prodrug) or laccase (LAC, as a bioactive enzyme) inside the liposomes without the use of organic solvents; the pores were then plugged by pH-sensitive glycol chitosan grafted with 3-diethylaminopropylamine (GDEAP) and avidin (or biotin). As a result, single liposomes with QER and biotin-GDEAP were efficiently coupled with other liposomes with LAC and avidin-GDEAP. We demonstrated that the TLs could accelerate QER and LAC release at acidic pH (6.8), improving the LAC-mediated oxidization of QER and significantly elevating tumor cell death, suggesting that this strategy can be used as an efficient method for the programmed action of prodrugs.


Asunto(s)
Avidina , Profármacos , Avidina/metabolismo , Biotina , Concentración de Iones de Hidrógeno , Lacasa , Liposomas , Profármacos/farmacología , Quercetina/farmacología
9.
Methods ; 197: 54-62, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-33677061

RESUMEN

Biosensing atomic force microscopy (AFM) offers the unique feature to determine the energy landscape of a bimolecular interaction at the real single molecule level. Furthermore, simultaneous and label-free mapping of molecular recognition and the determination of sample topography at the nanoscale gets possible. A prerequisite and one of the major parts in biosensing AFM are the bio-functionalized AFM tips. In the past decades, different approaches for tip functionalization have been developed. Using these functionalization strategies, several biological highly relevant interactions at the single molecule level have been explored. For the most common approach, the use of a heterobifunctional poly(ethylenglycol) crosslinker, a broad range of linkers for different chemical coupling strategies is available. Nonetheless, the time consuming functionalization protocol as well as the broad distribution of rupture length reduces the possibility of automation and may reduce the accuracy of the results. Here we present a stable and fast forward approach based on tetra-functional DNA tetrahedra. A fast functionalization and a sharp defined distribution of rupture length gets possible with low effort and high success rate. We tested the performance on the classical avidin biotin system by using tetrahedra with three disulfide legs for stable and site directed coupling to gold coated tips and a biotinylated end at the fourth vertex. A special advantage appears when working with a DNA aptamer as sensing molecule. In this case, the fourth strand can be extended by a certain DNA sequence complementary to the linkage part of an aptamer. This AFM tip functionalization protocol was applied on thrombin using DNA aptamers directed against the fibrinogen binding side of human thrombin.


Asunto(s)
Aptámeros de Nucleótidos , Avidina , Aptámeros de Nucleótidos/metabolismo , Avidina/química , Avidina/metabolismo , Biotina/química , ADN , Humanos , Microscopía de Fuerza Atómica/métodos
10.
Hum Cell ; 35(1): 163-178, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34643933

RESUMEN

The integral membrane, Kunitz-type, serine protease inhibitors, HAI-1 and HAI-2, closely resemble one another structurally and with regard to their specificity and potency against proteases. Structural complementarity between the Kunitz domains and serine protease domains renders the membrane-associated serine proteases, matriptase and prostasin, the primary target proteases of the HAIs. The shared biochemical enzyme-inhibitor relationships are, however, at odds with their behavior at the cellular level, where HAI-1 appears to be the default inhibitor of these proteases and HAI-2 a cell-type-selective inhibitor, even though they are widely co-expressed. The limited motility of these proteins caused by their membrane anchorages may require their co-localization within a certain distance to allow the establishment of a cellular level functional relationship between the proteases and the inhibitors. The differences in their subcellular localization with HAI-1 both inside the cell and on the cell surface, compared to HAI-2 predominately in intracellular granules has, therefore, been implicated in the differential manner of their control of matriptase and prostasin proteolysis. The targeting signals present in the intracellular domains of the HAIs are systematically investigated herein. Studies involving domain swap and point mutation, in combination with immunocytochemistry and cell surface biotinylation/avidin depletion, reveal that the different subcellular localization between the HAIs can largely be attributed to differences in the intracellular Arg/Lys-rich and EHLVY motifs. These intrinsic differences in the targeting signal render the HAIs as two independent rather than redundant proteolysis regulators.


Asunto(s)
Secuencias de Aminoácidos , Arginina/metabolismo , Membrana Celular/metabolismo , Espacio Intracelular/metabolismo , Lisina/metabolismo , Glicoproteínas de Membrana/metabolismo , Proteínas Inhibidoras de Proteinasas Secretoras/metabolismo , Avidina/metabolismo , Biotinilación , Células Cultivadas , Gránulos Citoplasmáticos/metabolismo , Humanos , Dominios Proteicos , Proteolisis , Serina Endopeptidasas/metabolismo
11.
ACS Biomater Sci Eng ; 7(12): 5611-5621, 2021 12 13.
Artículo en Inglés | MEDLINE | ID: mdl-34767332

RESUMEN

Biotin-avidin interactions have been explored for decades as a technique to functionalize biomaterials, as well as for in vivo targeting, but whether changes in these interactions can be leveraged for immunomodulation remain unknown. The goal of this study was to investigate how biotin density and avidin variant can be used to deliver the immunomodulatory cytokine, interleukin 4 (IL4), from a porous gelatin scaffold, Gelfoam, to primary human macrophages in vitro. Here, we demonstrate that the degree of scaffold biotinylation controlled the binding of two different avidin variants, streptavidin and CaptAvidin. Biotinylated scaffolds were also loaded with streptavidin and biotinylated IL4 under flow, suggesting a potential use for targeting this biomaterial in vivo. While biotin-avidin interactions did not appear to influence the protein release in this system, increasing degrees of biotinylation did lead to increased M2-like polarization of primary human macrophages over time in vitro, highlighting the capability to leverage biotin-avidin interactions to modulate the macrophage phenotype. These results demonstrate a versatile and modular strategy to impart immunomodulatory activity to biomaterials.


Asunto(s)
Avidina , Biotina , Avidina/metabolismo , Materiales Biocompatibles , Biotina/metabolismo , Biotinilación , Humanos , Inmunomodulación
12.
J Biol Chem ; 295(32): 11174-11183, 2020 08 07.
Artículo en Inglés | MEDLINE | ID: mdl-32554809

RESUMEN

Stimulator of interferon genes (STING) mediates cytosolic DNA-induced innate immune signaling via membrane trafficking. The global identification of proteins that spatiotemporally interact with STING will provide a better understanding of its trafficking mechanisms and of STING signaling pathways. Proximity-dependent biotin identification (BioID) is a powerful technology to identify physiologically relevant protein-protein interactions in living cells. However, biotinylated peptides are rarely detected in the conventional BioID method, which uses streptavidin beads to pull down biotinylated proteins, because the biotin-streptavidin interaction is too strong. As a result, only nonbiotinylated peptides are identified, which cannot be distinguished from peptides of nonspecifically pull-downed proteins. Here, we developed a simple method to efficiently and specifically enrich biotinylated peptides using Tamavidin 2-REV, an engineered avidin-like protein with reversible biotin-binding capability. Using RAW264.7 macrophages stably expressing TurboID-fused STING, we identified and quantified >4,000 biotinylated peptides of STING-proximal proteins. Various endoplasmic reticulum-associated proteins were biotinylated in unstimulated cells, and STING activation caused biotinylation of many proteins located in the Golgi and endosomes. These proteins included those known to interact with activated STING, such as TANK-binding kinase 1 (TBK1), several palmitoyl transferases, and p62/sequestosome 1 (SQSTM1). Furthermore, interferon-induced transmembrane protein 3 (IFITM3), an endolysosome-localized antiviral protein, bound to STING at the late activation stage. These dynamic interaction profiles will provide detailed insights into STING signaling; we propose that our approach using Tamavidin 2-REV would be useful for BioID-based and other biotinylation-based peptide identification methods.


Asunto(s)
Avidina/metabolismo , Productos del Gen rev/metabolismo , Proteínas de la Membrana/genética , Animales , Biotinilación , Proteínas de la Membrana/química , Proteínas de la Membrana/metabolismo , Ratones , Péptidos/metabolismo , Fosforilación , Células RAW 264.7 , Transducción de Señal
13.
Biotechnol Prog ; 36(5): e3031, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32463160

RESUMEN

Optimized conditions are needed to refold recombinant proteins from bacterial inclusion bodies into their biologically active conformations. In this study, we found two crucial requirements for efficient refolding of cationic tetrameric chicken avidin. The first step is to eliminate nucleic acid contaminants from the bacterial inclusion body. The electrostatic interactions between the remaining nucleic acids and proteins strongly enhanced protein aggregation during the refolding process. The cysteine specific reversible S-cationization procedure was successfully employed for large-scale preparation of nucleic acid free denatured protein without purification tag system. The second step is the intramolecular disulfide formation prior to refolding in dialysis removing denaturant. Disulfide intact monomeric avidin showed efficient formation of biologically active tetrameric conformation during the refolding process. Using this optimized refolding procedure, highly cationic avidin derivative designed as an intracellular delivery carrier of biotinylated protein was successfully prepared.


Asunto(s)
Avidina , Proteínas Recombinantes , Animales , Avidina/química , Avidina/aislamiento & purificación , Avidina/metabolismo , Pollos , Disulfuros/química , Cuerpos de Inclusión/química , Oxidación-Reducción , Replegamiento Proteico , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo
14.
Methods Mol Biol ; 2127: 151-165, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32112321

RESUMEN

The selective immobilization of proteins represents an essential step in the selection of binding proteins such as antibodies. The immobilization strategy determines how the target protein is presented to the binders and thereby directly affects the experimental outcome. This poses specific challenges for membrane proteins due to their inherent lack of stability and limited exposed hydrophilic surfaces. Here we detail methodologies for the selective immobilization of membrane proteins based on the strong biotin-avidin interaction and with a specific focus on its application for the selection of nanobodies and sybodies. We discuss the challenges in generating and benefits of obtaining an equimolar biotin to target-protein ratio.


Asunto(s)
Avidina/metabolismo , Biotina/metabolismo , Biotinilación/métodos , Proteínas de la Membrana/metabolismo , Anticuerpos de Dominio Único/aislamiento & purificación , Secuencia de Aminoácidos , Avidina/química , Biotina/química , Ligasas de Carbono-Nitrógeno/química , Ligasas de Carbono-Nitrógeno/metabolismo , Técnicas de Visualización de Superficie Celular/métodos , Clonación Molecular/métodos , Escherichia coli , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Klebsiella pneumoniae , Proteínas de la Membrana/química , Proteínas de la Membrana/genética , Proteínas de la Membrana/aislamiento & purificación , Unión Proteica , Proteínas Represoras/química , Proteínas Represoras/metabolismo , Ribosomas/química , Ribosomas/metabolismo , Anticuerpos de Dominio Único/química , Anticuerpos de Dominio Único/metabolismo , Estreptavidina/química , Estreptavidina/metabolismo
15.
Methods Enzymol ; 633: 21-28, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32046847

RESUMEN

Chicken avidin and bacterial streptavidin are workhorses in biotechnology. We have used avidin as a scaffold protein to develop avidin variants with novel ligand-binding affinity, so-called antidins. This article covers the strategy applied in the development of antidins. Using a phage display developed for avidin, immobilized ligands were used to select binders from a phage pool displaying avidin variants with randomized sequence in the protein loops. Antidins binding various ligands with nanomolar affinity were obtained. Antidins have already been demonstrated to be suitable for a diagnostic assay measuring serum progesterone levels and they offer a promising alternative to antibodies for the recognition of small molecules.


Asunto(s)
Avidina/química , Biotina/química , Hidrocortisona/análisis , Progesterona/análisis , Ingeniería de Proteínas/métodos , Estreptavidina/química , Animales , Avidina/genética , Avidina/metabolismo , Sitios de Unión , Biotina/metabolismo , Pollos , Biblioteca de Genes , Hidrocortisona/metabolismo , Ligandos , Biblioteca de Péptidos , Progesterona/metabolismo , Unión Proteica , Estreptavidina/genética , Estreptavidina/metabolismo , Streptomyces
16.
J Mol Model ; 25(12): 361, 2019 Nov 26.
Artículo en Inglés | MEDLINE | ID: mdl-31773283

RESUMEN

Biotin is well known to be bound with exceptional strength by the avidin class of proteins. This ability comes from a match between the biotin-binding pocket of the protein and the structural elements of biotin, including its ureido and thiolane rings. Here we investigate the solvation shell of biotin in water as revealed by classical force field molecular dynamics with GAFF force field. Snapshots from the classical molecular dynamics were then used to generate microsolvated structures. Details of hydrogen bonding patterns present in these microsolvated structures were studied by symmetry-adapted perturbation theory (SAPT). Interaction energy values for small models of biotin hydrated by 5 or 6 water molecules show that the cooperativity constitutes 15-22% of the total interaction energy and corresponds roughly to formation of one additional hydrogen bond to biotin. The SAPT analysis shows the differences underlying hydrogen bonds of similar strength (with oxygen or sulfur atoms as the hydrogen bond acceptors, and with nitrogen atom playing a dual role of the donor and acceptor).


Asunto(s)
Avidina/metabolismo , Biotina/metabolismo , Solventes/química , Agua/química , Avidina/química , Sitios de Unión , Biotina/química , Enlace de Hidrógeno , Ligandos , Simulación de Dinámica Molecular , Estructura Molecular , Unión Proteica , Relación Estructura-Actividad
17.
Nat Commun ; 10(1): 4347, 2019 09 25.
Artículo en Inglés | MEDLINE | ID: mdl-31554812

RESUMEN

Spatiotemporal control over engineered tissues is highly desirable for various biomedical applications as it emulates the dynamic behavior of natural tissues. Current spatiotemporal biomaterial functionalization approaches are based on cytotoxic, technically challenging, or non-scalable chemistries, which has hampered their widespread usage. Here we report a strategy to spatiotemporally functionalize (bio)materials based on competitive supramolecular complexation of avidin and biotin analogs. Specifically, an injectable hydrogel is orthogonally post-functionalized with desthiobiotinylated moieties using multivalent neutravidin. In situ exchange of desthiobiotin by biotin enables spatiotemporal material functionalization as demonstrated by the formation of long-range, conformal, and contra-directional biochemical gradients within complex-shaped 3D hydrogels. Temporal control over engineered tissue biochemistry is further demonstrated by timed presentation and sequestration of growth factors using desthiobiotinylated antibodies. The method's universality is confirmed by modifying hydrogels with biotinylated fluorophores, peptides, nanoparticles, enzymes, and antibodies. Overall, this work provides a facile, cytocompatible, and universal strategy to spatiotemporally functionalize materials.


Asunto(s)
Avidina/química , Materiales Biocompatibles/química , Biotina/química , Sustancias Macromoleculares/química , Animales , Anticuerpos/química , Anticuerpos/metabolismo , Avidina/metabolismo , Materiales Biocompatibles/metabolismo , Biotina/análogos & derivados , Biotina/metabolismo , Biotinilación/métodos , Línea Celular , Humanos , Hidrogeles/química , Hidrogeles/metabolismo , Sustancias Macromoleculares/metabolismo , Ratones , Nanopartículas/química , Péptidos/química , Péptidos/metabolismo , Análisis Espacio-Temporal , Ingeniería de Tejidos/métodos
18.
Chem Asian J ; 14(17): 2953-2957, 2019 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-31321878

RESUMEN

This paper describes the synthesis of protein microtube motors having a urease interior surface and highlights their nonbubble-propelled behavior driven by enzymatic reaction (urea→NH3 and CO2 ). The precursor microtubes were prepared by layer-by-layer assembly using a track-etched microporous polycarbonate membrane. Immobilization of a urease on the internal wall was accomplished using avidin-biotin interaction. The tubules swam smoothly in an aqueous media containing a physiological concentration of urea. Each tubule was rotating laterally while moving forward. It is remarkable that the microtubes were digested completely by proteases, demonstrating perfect biodegradability.


Asunto(s)
Avidina/química , Biotina/química , Ureasa/metabolismo , Avidina/metabolismo , Biotina/metabolismo , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/metabolismo , Cemento de Policarboxilato/química , Porosidad , Urea/química , Urea/metabolismo , Ureasa/química
19.
Adv Healthc Mater ; 8(17): e1900665, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31318180

RESUMEN

The targeted pharmacological modulation of polymorphonuclear leukocytes (PMNs) is of major medical interest. These innate immune cells play a central role in the defense against pathogenic microorganisms. However, their excessive chemotactic recruitment into tissues after traumatic injury is detrimental due to local and systemic inflammation. Rho-GTPases, being the master regulators of the actin cytoskeleton, regulate migration and chemotaxis of PMNs, are attractive pharmacological targets. Herein, supramolecular protein complexes are assembled in a "mix-and-match" approach containing the specific Rho-inhibiting clostridial C3 enzyme and three PMN-binding peptides using an avidin platform. Selective delivery of the C3 Rho-inhibitor with these complexes into the cytosol of human neutrophil-like NB-4 cells and primary human PMNs ex vivo is demonstrated, where they catalyze the adenosine diphosphate (ADP) ribosylation of Rho and induce a characteristic change in cell morphology. Notably, the complexes do not deliver C3 enzyme into human lung epithelial cells, A549 lung cancer cells, and immortalized human alveolar epithelial cells (hAELVi), demonstrating their cell type-selectivity. The supramolecular complexes represent attractive molecular tools to decipher the role of PMNs in infection and inflammation or for the development of novel therapeutic approaches for diseases that are associated with hyperactivity and reactivity of PMNs such as post-traumatic injury.


Asunto(s)
Neutrófilos/metabolismo , Toxinas Biológicas/farmacología , ADP Ribosa Transferasas/metabolismo , Avidina/metabolismo , Biotinilación , Toxinas Botulínicas/metabolismo , Línea Celular , Citosol/metabolismo , Endocitosis/efectos de los fármacos , Humanos , Neutrófilos/efectos de los fármacos , Péptidos/síntesis química , Péptidos/química
20.
Clin Lab ; 65(6)2019 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-31232038

RESUMEN

BACKGROUND: GLP-1 as an incretin, has the ability to decrease blood sugar levels in a glucose-dependent manner by enhancing the secretion of insulin. Besides the insulinotropic effects, GLP-1 has been associated with numerous regulatory and protective effects. Thus, the action of GLP-1 is preserved in patients with type 2 diabetes and substantial pharmaceutical research has therefore been directed towards the development of GLP-1-based treatment. METHODS: In this work, we reported an electrochemical sense array based on the aptamer and biotin-avidin system for the detection of glucagon-like peptide-1 (GLP-1). The sense array employed a "stem-loop" conformation ap-tamer which was immobilized on the electrode of the 16-unit gold array via pre-labeled thiol group (-SH). Pre-labeled biotin serves as an affinity tag for the binding of avidin-horseradish peroxidase (avidin-HRP). The stem-loop structure of the aptamer kept the biotin from being approached by a bulky avidin-HRP by means of the steric hindrance. After the interaction of the target (GLP-1) and the aptamer, the aptamer would undergo a significant conformational change to force biotin away from the electrode, giving the avidin-HRP easy access to the labeled biotin. The HRP in the substrate could sensitively transduce the concentration of GLP-1 into the electrical signals, which were then measured by electrochemical technology of cyclic voltammetry and amperometric i-t curve. RESULTS: Under the optimal experimental conditions, the proposed sense array for GLP-1 had a good linear relationship from 0.1 pmol/L to 20 pmol/L with a detection limit of 0.05 pmol/L and can be used to accurately detect the GLP-1 in serum. CONCLUSIONS: The experimental results show that GLP-1 could be selectively detected by the electrochemical sense array, indicating that the proposed sense array based on the biotin-avidin system and the stem-loop aptamer has great potential in the detection of GLP-1.


Asunto(s)
Aptámeros de Nucleótidos/metabolismo , Avidina/metabolismo , Técnicas Biosensibles/métodos , Biotina/metabolismo , Técnicas Electroquímicas/métodos , Péptido 1 Similar al Glucagón/sangre , Aptámeros de Nucleótidos/química , Diabetes Mellitus Tipo 2/sangre , Peroxidasa de Rábano Silvestre/metabolismo , Humanos , Unión Proteica , Reproducibilidad de los Resultados
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